Introduction | Installation | Multithreading | Example analysis on data by Vicari et al. (2024) | Data exploration | Single-image analysis | Multi-image analysis | Other common input formats | SpatialExperiment and MultiAssayExperiment | Single-image | Multi-image | AnnData | Troubleshooting | Sbivar takes forever | Job did not deliver a result | Warnings | Variogram fitting | GAM fitting | gfortran not found on Mac | Session info | Bibliography

Introduction | Installation instructions | Multithreading | Yang data: lycophyte roots | Univariate tests | Tests for univariate aggregation or regularity: nearest neighbour distances | Bivariate tests | Tests for colocalization or antilocalization: interfeature nearest neighbour distances | Eng2019: Mouse brain cells | Vicinity to cell edge or centroid, and other within-cell localization patterns | Gradients | Predicting tumor types with probabilistic indices as predictor | Schematic workflow | Troubleshooting | Session info | Bibliography

Introduction | Installation instuctions | Illustration | Spatial autocorrelation | Temporal autocorrelation | Penalty parameter and cross-validation | Session info

Introduction | Installation instructions | Illustrative examples | Linear model | Regularised linear model | Random forest | Session info